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GigaBlog
Data driven blogging from the GigaScience editors
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TechnologyGenome AssemblyGenomicsOpen SourceQ&ABiological Sciences
Published

The SAMtools suite of tools for manipulating sequencing data one of the most ubiquitous tools in bioinformatics, as the “glue” holding together much of bioinformatics we see it used in pretty much every genomics pipeline we are submitted.

HealthDiversityGenomeGenomicsICG PrizeBiological Sciences
Published

The International Ukraine Genetic Diversity Project finds a quarter of the genetic variation in Europe, dramatically increasing information on population diversity and medical genetic variation. Today, the largest study of genetic diversity in Ukraine was published in GigaScience . The project was an international effort, bringing together researchers in Ukraine, the US and China and is the first fruits of this collaboration to

TechnologyGenomicsInfectious DiseaseLong Read SequencingNanoporeBiological Sciences
Published

The first comprehensive mobile genome analysis application, iGenomics, is now available for download and use on an iOS smartphone . By pairing an smartphone with a handheld DNA sequencer, users will be able to create a mobile genetics laboratory, reminiscent of the Star Trek’s “tricorder”. Just published is an article presenting  iGenomics, the first DNA sequencing toolkit that can run on a smartphone.

BiologyEvolutionG10KGenomeGenome AssemblyBiological Sciences
Published

With the recent launch of our new GigaByte journal you may have noticed some interesting genome datasets being published, including the banjo frog, common dragonet fish, and extremely rare Nyssa yunnanensis tree. Joining these species on the genomics tree of life this month is a small mouse-like marsupial called the brown antechinus.

Open AccessCOVID19ICGICG PrizeICG15Biological Sciences
Published

We are proud to announce Prof Zhang Yongzhen winner the 2020 ICG-15 GigaScience Prize for Outstanding Data Sharing during the COVID-19 Pandemic . Last month was the 10th consecutive year we’ve attended our co-publisher BGI’s annual ICG (International Conference on Genomics) gathering, and the third time we have presented a prize at the meeting. This years award was for Dr. Zhang’s outstanding efforts in sharing the first

PublishingCancerControlled AccessGigaDBHuman GeneticsBiological Sciences
Published

We have a Q&A with author Matthieu Foll from the WHO International Agency for Research on Cancer (IARC) on his new GigaScience paper presenting multi-omic data from rare lung neuroendocrine neoplasms and his experience having the precious Controlled Access data peer reviewed by named peer reviewers. As a journal focused on reproducibility of research GigaScience has a strict open-science policy, meaning

HealthCell BiologyConferenceConferencesCoronavirusBiological Sciences
Published

The Human Cell Atlas is a consortium that aims to “create comprehensive reference maps of all human cells—the fundamental units of life—as a basis for both understanding human health and diagnosing, monitoring, and treating disease.” I first met with consortium members of the Human Cell Atlas at the Human BioMolecular Atlas Program Common Coordinates Framework Workshop based at the National Institutes of Health, Bethesda, USA in December 2017.