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GigaBlog
Data driven blogging from the GigaScience editors
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PublishingBiosharingFAIRFAIR DataFAIRsharingBiological Sciences
Published

As part of the FAIRsharing Community Network (see previous blog) and joint Force11 and Research Data Alliance (RDA) FAIRsharing Working Group we have been involved in efforts to develop a shared, cross-publisher list of recommended data deposition repositories. The first fruits of these are a preprint from the working group and DataCite (of which we are also members) summarising what we feel should be the key criteria for selection.

BiologyConferenceConferencesImagingNeuroimagingBiological Sciences
Published

EMBL Heidelberg was the venue for the EMBL Symposium: Seeing is Believing – Imaging the Molecular Processes of Life that took place on 9-12 October 2019. This was the second EMBL meeting on imaging data we attending this year after VIZBI (see the write-up here), GigaScience Data Scientist Chris Armit was there and was astonished at how recent breakthroughs in imaging technology are enlightening our understanding of the Life Sciences.

Biology1KPData SharingGenomicsGigaDBBiological Sciences
Published

Lessons learned in the evolution of large-scale data sharing New studies out today elucidate the framework for 1 billion years of green plant evolution. The work are the results of nearly a decades work from an international consortium of nearly 200 plant researchers generating gene sequences from more than 1100 plant species.

BiologyAvian Phylogenomics ProjectB10KBird GenomeEvolutionBiological Sciences
Published

The Penguin Genome Consortium sequences all living penguin species genomes to understand the evolution of life on the ice. Published today in GigaScience is an article that presents the first effort to capture the entirety of the genomic landscape of all living penguin species.

BiologyConferencesConnectomicsFMRIINCFBiological Sciences
Published

The view from the Marie Sklodowska Curie Museum, where Marie lived as a child. This year’s Neuroinformatics 2019 meeting took place in the beautiful and historic city of Warszawa (Warsaw). Warszawa remains a pilgrimage city for scientists, with arguably its most famous resident Marie Sklodowska Curie being the first woman to win a Nobel Prize, and the only person ever to win the Nobel Prize twice in two different scientific fields.

BiologyAvian Phylogenomics ProjectBird GenomeBirdsEastern Yellow RobinBiological Sciences
Published

Painting of the Eastern Yellow Robin by Prof Paul Sunnucks. Today in Gigascience we published an avian genome assembly with a twist. An Australian team at Monash University discovered unusual, so-called neo-sex chromosomes in the genome of the Eastern Yellow Robin. Being big fans of bird genomes (see our support of the Avian Phylogenomic and B10K projects) it is great to see another one take flight.

TechnologyBig DataDataImicrobeMetagenomicsBiological Sciences
Published

In this data-driven era, research is faced with new challenges, from sharing, storing and accessing data, including how to better integrate data to answer big questions in science. With many data repositories available, it is hard to maintain them all – some repositories are forced to close – meaning loss of access to invaluable datasets.