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Data driven blogging from the GigaScience editors
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PublishingAIBioinformaticsComputational BiologyConferencesBiological Sciences
Published

**Editors: Mark Wass (University of Kent, UK), Iddo Friedberg (Miami University, Oxford, Ohio, USA), Predrag Radivojac (Indiana University, Bloomington, Indiana, USA)**To tie in with the upcoming Automated Function Prediction Special Interest Group (AFP-SIG) at the ISMB/ECCB 2013 meeting in Berlin, GigaScience and the organisers are launching a call for submissions to a thematic series of research from the meeting and beyond

TechnologyAsperaConferencesFTPGigaDBBiological Sciences
Published

The speed of data Last week was the Bio-IT World Asia meeting in Singapore, and while we didn’t attend this year (see last years conference report in Genome Biology ), our editorial board member Tin-Lap Lee presented on the GigaGalaxy server that we have been collaborating with him on (see slides). Also timed for the meeting, Aspera made a press release on our recent adoption of their suite of software products to

MedicineData CitationData PublicationDOIFMRIBiological Sciences
Published

Last week we published our first neuroscience data note containing 10GB of fMRI data hosted and integrated into the paper by a DOI to our GigaDB database. While we have published a number of genomics datasets and data notes (see the Puerto Rican Parrot genome data note and its associated data DOI), this is a nice example of us providing a home for “orphan data”, the long tail of data types without community agreed curated repositories.

TechnologyGalaxyGigaGalaxyMetabolomicsWorkflowBiological Sciences
Published
Author Peter Li

Sophisticated computational analyses must be performed on metabolomics data in order to measure the abundances of the metabolites. However, this typically requires expert knowledge in computer programming and biostatistics, restricting the usefulness of metabolomics to specialised laboratories.

TechnologyUsegalaxyAPCConferencesGalaxyBiological Sciences
Published

The 2013 Galaxy Community Conference (GCC2013) and GigaScience are today announcing a call for papers for a special thematic focused series on studies utilizing large-scale datasets and workflows. Galaxy is an open, web-based platform for data intensive biomedical research allowing their growing community of users to reproduce and share analyses.

BiologyBiodiversityDataDOIGenomicsBiological Sciences
Published

Insect goo aids biodiversity research Apologies to Jonathan Eisen (see Badomics in the journal), but today in GigaScience we publish a new “squishomics” approach for assessing and understanding biodiversity, using the slightly wacky sounding method of combining DNA-soup made from crushed-up insects and the latest sequencing technology.