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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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Published

I've published a short note on my work on geophylogenies and GeoJSON in PLoS Currents Tree of Life : At the time of writing the DOI hasn't registered, so the direct link is here. There is a GitHub repository for the manuscript and code. I chose PLoS Currents Tree of Life because it is (supposedly) quick and cheap.

Published

In my last post I discussed why I thought the decision of The Plant List to use a restrictive license (CC-BY-NC-ND) was such a poor choice. CC-BY-NC-ND states that To make this point more concrete, I've created this site: Experiments with The Plant List to show the kinds of things that The Plant List's choice of license prevents the taxonomic community from doing.

Published

The Plant List (http://www.theplantlist.org/) has been released today, complete with glowing press releases. The list includes some 1,040,426 names. I eagerly looked for the Download button, but none is to be found. You can grab download individual search results (say, at family level), but not the whole data set.

Published

Last night BBC One aired David Attenborough's Charles Darwin and the Tree of Life, which featured a lovely "fly through" the tree of life: In conjunction with the TV show, the Wellcome Trust has launched the Interactive Tree of Life, a Flash-based view of the tree of life. There's also a blog about the project. Here's a demo of the tree: The tree looks very nice, and a lot of work has gone into it, but I am somewhat underwhelmed.