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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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Quick note to self about exporting data from my Australian Faunal Directory on CouchDB project. To export data from a CouchDB view you can use a list function (see Formatting with Show and List). Following the example on the Kanapes IDE blog, I created the following list function: { "_id": "_design/publication", "_rev": "14-467dee8248e97d874f1141411f536848", "language": "javascript", "lists": { "tsv": "function(head,req) { var row;

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Last December I released a web site called Australian Faunal Directory on CouchDB, which was part of my ongoing exploration of how to build a simple yet useful database of taxonomic names. In particular, I want to link names directly to the primary taxonomic literature.

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Continuing my hobby horse of linking taxonomic databases to digitised literature, I've been working for the last couple of weeks on linking names in the Australian Faunal Directory (AFD) to articles in the Biodiversity Heritage Library (BHL). AFD is a list of all animals known to occur in Australia, and it provides much of the data for the recently released Atlas of Living Australia.

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Time (just) for a Friday folly. A couple of days ago the latest edition of the Catalogue of Life (CoL) arrived in my mailbox in the form of a DVD and booklet: While in some ways it's wonderful that the Catalogue of Life provides a complete data dump of its contents, this strikes me as a rather old-fashioned way to distribute it. So I began to wonder how this could be done differently, and started to think of CouchDB.

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@mikeal a little tedious. you can take OSM and then convert it to SHP and then http://github.com/maxogden/shp2geocouchless than a minute ago via web max ogden maxogden The tweet above inspired me to take a quick look at GeoCouch, a version of CouchDB that supports spatial queries. This is something I need if I'm going to start playing seriously with CouchDB.

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Playing with @couchdb, starting to think of the Mendeley API as a read/write JSON store, and having a reader app built on that...less than a minute ago via Tweetie for Mac Roderic Page rdmpage It's slowly dawning on me that many of the ingredients for an alternative different way to browse scientific articles may already be in place.