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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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Published

GBIF has reached 1 billion occurrences which is, of course, something to celebrate: An achievement on this scale represents a lot of work by many people over many years, years spent developing simple standards for sharing data, agreeing that sharing is a good thing in the first place, tools to enable sharing, and a place to aggregate all that shared data (GBIF). So, I asked a question: My point is not to do this: Rather it is to encourage a

Published

First off, let me say that what follows is a lot of arm waving to try and obscure how little I understand what I'm talking about. I'm going to sketch out what I think is a "radical" idea for a GBIF Challenge entry. The motivation for this idea comes from several sources: 1. GBIF is (under-)funded by direct contributions from governments, hence each year it essentially "begs" for money.

Published

Some random notes on the first day of TDWG 2017. First off, great organisation with the first usable conference calendar app that I've seen (https://tdwg2017.sched.com). I gave the day's keynote address in the morning (slides below). Towards a biodiversity knowledge graph from Roderic Page It was something of a stream of consciousness brain dump, and tried to cover a lot of (maybe too much) stuff.

Published

The following is a guest post by Bob Mesibov. Do you know the party game "Telephone", also known as "Chinese Whispers"? The first player whispers a message in the ear of the next player, who passes the message in the same way to a third player, and so on. When the last player has heard the whispered message, the starting and finishing versions of the message are spoken out loud. The two versions are rarely the same.

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Nico Franz and Beckett W. Sterner recently published a preprint entitled "To Increase Trust, Change the Social Design Behind Aggregated Biodiversity Data" on bioRxiv http://dx.doi.org/10.1101/157214 Below is the abstract: Below I respond to some specific points that annoyed me about this article, at the end I try and sketch out a more constructive response.

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GBIF is running its Ebbe Nielsen Challenge for the third successive year. This year the title is Liberating species records from open data repositories for scientific discovery and reuse. To quote from the Challenge background on Devpost: In essence, the 2017 Challenge is to develop tools to discover these biodiversity-relevant datasets, and make them available to GBIF.