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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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Published

D. Ross Robertson has published a paper entitled "Global biogeographical data bases on marine fishes: caveat emptor" (doi:10.1111/j.1472-4642.2008.00519.x - DOI is broken, you can get the article here). The paper concludes: As I've noted elsewhere on this blog, and as demonstrated by Yesson et al.'s paper on legume records in GBIF (doi:10.1371/journal.pone.0001124) (not cited by Robertson), there are major problems with geographical information

Published

Interesting paper by Huss et al. in PLoS Biology entitled "A Gene Wiki for Community Annotation of Gene Function" (doi:10.1371/journal.pbio.0060175). Essentially, the paper describes using Wikipedia to create a comprehensive gene wiki: Given that the EOL project seems stalled (i.e., the current content hasn't changed), and the existing Wikipedia content is often much richer than EOL's, one has to ask why EOL doesn't give up it's current model

Published

Mauro Cavalcanti brought Chris Anderson's The End of Theory article in Wired to my attention, part of the July issue on "The End of Science". Of course, the end of science is hyperbole of the highest order (as, indeed, is the "end of theory"). It is also ironic that in the same issue Wired confess to having gotten 5 predictions of the death of something hopelessly wrong (including web browsers and online music swapping, no less). However, I

Published

Some thoughts on the first release of the Encyclopedia of Life. I am being deliberately critical. This is a high profile project with tens of millions of dollars in funding, lots of people involved, and is accompanied by some of the most overblown hype in organismal biology. In a sense I think EOL has set itself up by over promising and under delivering.

Published

Mitch Leslie has written an article on EoL (doi:10.1126/science.316.5826.818). It starts: Déjà vu because the defunct All-Species Foundation -- also covered in Science (doi:10.1126/science.294.5543.769) -- had much the same ambitions six years ago. It is easy to be sceptical, but I think it was Rudi Giuliani who said "under promise, over deliver." Wise words.

Published

The Encyclopedia of Life web site is up, together with some rather breathless publicity and this cool movie. Of course, it's all vapourware just now. I'm involved in some of the informatics in an advisory role. It will be interesting to see what happens. Let's hope that the fate of EoL will be different to that of the similarly ambitious All Species. Oh, and then there's SpeciesBase... For some reaction see Slashdot.