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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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BBCBHLEncylcopedia Of LifeLinked DataMashupComputer and Information Sciences
Published

Last month EOL took the brave step of including Wikipedia content in its pages. I say "brave" because early on EOL was pretty reluctant to embrace Wikipedia on this scale (see the report of the Informatics Advisory Group that I chaired back in 2008), and also because not all of EOL's curators have been thrilled with this development.

AppleIPadPerceptive PixelTouch ScreenComputer and Information Sciences
Published

OK, first of all, I want one, I want one real bad.There's been a general sense of disappointment about the iPad, which I suspect is only natural given the enormous hype leading up to the announcement, as well as the fact that the applications shown were fairly conventional.

BHLBioStorSucksComputer and Information Sciences
Published

My BioStor project has reached over 13,000 articles, making it a sizeable respository of open access articles on biodiversity. It's still a tiny fraction of what could be extracted from the Biodiversity Heritage Library (BHL), but perhaps it's worth taking stock of what's there. Coverage One pleasing discovery is that, despite the 1923 cut-off due to U.S. copyright, BHL contains a lot of post-1923 articles.

2010PredictionsComputer and Information Sciences
Published

Given that a new decade prompts predictions, as well as New Year's resolutions, and that 2010 is the International Year of Biodiversity, which comes complete with glossy web sites and calls for action, I'm making some predictions of my own, inspired in part by Eric Hellman's Ten Predictions for the Next Ten Years. I won't be nearly as bold as Eric, I'm limiting myself to biodiversity informatics, and the coming year.

BHLBioStorCOinSMetadataOpenURLComputer and Information Sciences
Published

Today I finally got a project out the door. BioStor is my take on what an interface to theBiodiversity Heritage Library (BHL) could look like. It features the visualisations I've mentioned in earlier posts, such as Google maps based on extracted localities, and tag trees.

BHLTwitterVisualisationComputer and Information Sciences
Published

I've been buried in programming (and it's exam time at Glasgow) so I've not blogged for a month (gasp). I've been playing with ways to visualise Biodiversity Heritage Library content for a while (click here for a list of previous posts), and have occasionally surfaced to tweet a screenshot via twitpic.

ScreencastTDWGWikiComputer and Information Sciences
Published

Sadly I won't be at TDWG 2009, at least not in person. However, there is a session on wikis, which may contain this brief screencast of my iTaxon experiments. The screencast was made in haste, but tries to convey some of the ideas behind these experiments, especially the idea that by linking data together we can generate more interesting and rich views of objects such as scientific publications.

BHLJavascriptLazy LoadComputer and Information Sciences
Published

One of the more glaring limitations of my BHL viewer described in the previous post is that it can take a while to load all the page thumbnails (there can be hundreds). Given that one of the original motivations for this project was a faster viewer, this kinda sucks.