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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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Catalogue Of LifeGUIDsIdentifiersComputer and Information Sciences
Published

A bit more browsing of the Catalogue of Life annual checklist for 2007 reveals a rather annoying feature that, I think, cripples the Catalogue's utility. With each release the checklist grows in size. From their web site: However, with each release the identifiers for each taxon change.

Encylcopedia Of LifeEOLVideoComputer and Information Sciences
Published

The Encyclopedia of Life web site is up, together with some rather breathless publicity and this cool movie. Of course, it's all vapourware just now. I'm involved in some of the informatics in an advisory role. It will be interesting to see what happens. Let's hope that the fate of EoL will be different to that of the similarly ambitious All Species. Oh, and then there's SpeciesBase... For some reaction see Slashdot.

BIOONEDOIDuplicatesJSTORComputer and Information Sciences
Published

I think this isn't supposed to happen, but here's a paper with two DOIs. The first DOI is doi:10.1651/0278-0372(1997)17[253:MPAOTC]2.0.CO;2, which links to a record served by BIOONE.

CitationCrossrefDOIHandlesOpenURLComputer and Information Sciences
Published

Playing with the recently released "Catalogue of Life" CD, and pondering Charles Hussey's recent post to TAXACOM about the "European Virtual Library of Taxonomic Literature (E-ViTL)" (part of EDIT) has got me thinking more and more about how primitive our handling of taxonomic literature is, and how it cripples the utility of taxonomic databases such as the Catalogue of Life.

Computer and Information Sciences
Published

In his post Matthew Cockerill lists three "practical things that Google could do to improve the communication of scientific research", one of which I'd like to highlight: I think this is timely because I've been thinking about citation in the broader sense (e.g., citation networks for GenBank sequences, museum specimens, and taxonomic names). Part of this has come out of thinking about using citation networks to find good phylogenies, but also

ClusterfuckYahooComputer and Information Sciences
Published

Wired's article How Yahoo Blew It contains this wonderful extract: For some reason, the word really appeals. Not that I've got anything against Yahoo -- far from it. The provide some very cool tools, such as Pipes, which is an interactive feed aggregator and manipulator. David Shorthouse brought this to my attention. As he points out, its highly relevant to our conversation on iSpecies.