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Jabberwocky Ecology

Jabberwocky Ecology
Ethan White and Morgan Ernest's blog for discussing issues and ideas related to ecology and academia.
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Published

This is the first of a new category of posts here at Jabberwocky Ecology called Research Summaries. We like the idea of communicating our research more broadly than to the small number of folks who have the time, energy, and interest to read through entire papers. So, for every paper that we publish we will (hopefully) also do a blog post communicating the basic idea in a manner targeted towards a more general audience.

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There is an exciting postdoc opportunity for folks interested in quantitative approaches to studying evolution in Michael Gilchrist’s lab at the University of Tennessee. I knew Mike when we were both in New Mexico. He’s really sharp, a nice guy, and a very patient teacher. He taught me all about likelihood and numerical maximization and opened my mind to a whole new way of modeling biological systems.

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In the comments of my post on the Ecological Data Wiki Jarrett Byrnes asked an excellent question: As I started to answer it I realized that my thoughts on the matter were better served by a full post, both because they are a bit lengthy and because I don’t actually know much about DataONE and would love to have some of their folks come by, correct my mistaken impressions, and just chat about this stuff in general.

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Author Morgan & Ethan

We are pretty excited about what modern technology can do for science and in particular the potential for increasingly rapid sharing of, and collaboration on, data and ideas. It’s the big picture that explains why we like to blog, tweet, publish data and code, and we’ve benefited greatly from others who do the same. So, when we saw this great talk by Michael Nielsen about Open Science, we just had to share.

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There is an excellent post on open science, prestige economies, and the social web over at Marciovm’s posterous*. For those of you who aren’t insanely nerdy** GitHub is… well… let’s just call it a very impressive collaborative tool for developing and sharing software***. But don’t worry, you don’t need to spend your days tied to a computer or have any interest in writing your own software to enjoy gems like: Thanks to Carl Boettiger

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An increasingly large number of folks doing research in ecology and other biological disciplines spend a substantial portion of their time writing computer programs to analyze data and simulate the outcomes of biological models. However, most ecologists have little formal training in software development¹. A recent survey suggests that we are not only;

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The Ecological Database Toolkit Large amounts of ecological and environmental data are becoming increasingly available due to initiatives sponsoring the collection of large-scale data and efforts to increase the publication of already collected datasets. As a result, ecology is entering an era where progress will be increasingly limited by the speed at which we can organize and analyze data.

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We have a postdoc position available for someone interested in the general areas of macroecology, quantitative ecology, and ecoinformatics. Here’s the short ad with links to the full job description: If you’re interested in the position and are planning to be at ESA please leave a comment or drop me an email (ethan.white@usu.edu) and we can try to set up a time to talk while we’re in Pittsburgh.

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I had an interesting conversation with someone the other day that made me think I needed one last frequency distribution post in order to avoid causing some people to not move forward with addressing interesting questions. As a quantitative ecologist I spent a fair amount of time trying to figure out the best way to do things. In other words, I often want to know what the best method is available for answering a particular question.