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Biological Sciences
Published
Author Open Bioinformatics Foundation

If you’d like the opportunity to present your work at BOSC 2019 (which will take place in Basel, Switzerland, on July 24-25, the last two days of ISMB/ECCB 2019), now’s your chance! The late round of abstract submission is open, and we will be choosing a few abstracts for “Late-Breaking Lightning Talks” as well as posters. BOSC welcomes submissions about all aspects of open source bioinformatics, open science and open data.

Biological Sciences
Published
Author Open Bioinformatics Foundation

We’re excited to announce that Nicola Mulder will be delivering the keynote at BOSC 2019. Read the abstract below for a taster of the talk to come… Dr Nicola Mulder Due to a history of exploitation and inequitable scientific partnerships, many African researchers are reluctant to fully embrace open science practices.

Biological Sciences
Published
Author Open Bioinformatics Foundation

Above: the old BOSC page. Below: the new one. If you’ve been around the OBF and BOSC community, you’re probably familiar with our slightly rusty old site, which ran on MediaWiki, the same open source software that runs Wikipedia. While they’re both awesome tools, we decided it was time for a refresh.

Biological Sciences
Published
Author Open Bioinformatics Foundation

This is a guest blog post from Md Kamruzzaman Sarker, who was supported by the ongoing Open Bioinformatics Foundation travel fellowship program to attend 2nd U.S. Semantic Technologies Symposium Series (US2TS). The OBF’s Travel Fellowship program continues to help open source bioinformatics software developers with funding to attend conferences or workshops. The current call closes on 15 April 2019.

Biological Sciences
Published
Author Open Bioinformatics Foundation

This is a guest blog post from Lindsay Rutter, who was supported by the ongoing Open Bioinformatics Foundation travel fellowship program to attend a National Center for Biotechnology Information (NCBI) hackathon and the Plant and Animal Genome Conference (PAG). The OBF’s Travel Fellowship program continues to help open source bioinformatics software developers with funding to attend conferences or workshops.

Biological Sciences
Published
Author Open Bioinformatics Foundation

BOSC 20xx panel Open Data: Standards, Opportunities and Challenges Every year, BOSC includes a panel discussion that offers attendees the chance to engage in conversation with the panelists and each other.

Biological Sciences
Published
Author Open Bioinformatics Foundation

BOSC 2019 Schedule (2020 schedule is coming soon!) Schedule at a glance Download the program without the abstracts [PDF, 15 pages] Download the complete program including abstracts [PDF, 147 pages] Note to speakers Please copy your slides to the podium computer during the break before your session. Also, we encourage presenters to upload their slides to the BOSC F1000 collection.

Biological Sciences
Published
Author Open Bioinformatics Foundation

Sponsoring BOSC Page with current BOSC Sponsors: open-bio.org/events/sponsors/ BOSC 2022 Platinum Sponsors BOSC 2022 Gold Sponsors BOSC 2022 Silver Sponsors Sponsorships from companies and organizations help to defray some of our costs and enable us to offer registration fee waivers for some conference participants.

Biological Sciences
Published
Author Open Bioinformatics Foundation

We have recently applied to Google for the OBF to be part of the Google Summer of Code 2019 programme, again with Kai Blin and Michael Crusoe as joint administrators. Last year, OBF GSoC 2018, was another good year with five students successfully completing their projects: Synchon Mandal (mentor Moritz Beber) “Adding methods to cobrapy for improved constraint-based metabolic modelling.” ( first blog bost;

Biological Sciences
Published
Author Open Bioinformatics Foundation

History 2000 First Bioinformatics Open Source Conference (BOSC). 2001 OBF grows out of volunteer projects BioPerl, BioJava and BioPython and is formally incorporated. 2005 Bylaws enacted for the first time and formal membership created. 2012 OBF becomes an associate project of Software in the Public Interest, Inc., a fiscal sponsorship organization.

Biological Sciences
Published
Author Open Bioinformatics Foundation

We had a great round of OBF travel fellowship candidates in our last round of applications, and after review we extended offers to three deserving applicants: Malvika Sharan, Lindsay Rutter, and Sarker Kamruzzaman. They’ve all accepted the award, and we’re looking forward to hearing about their experiences! Congratulations to our December 2018 recipients: Malvika Sharan will be attending BOSC at ISMB 2019 in Basel this July.