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Joe Friel reposted an article earlier this year on Efficiency Factor in running. Efficiency Factor (EF) can be viewed in Training Peaks software and he describes how it is calculated. This post describes how I went about calculating EF in R using a single gpx file. What is Efficiency Factor (EF)? Essentially, EF is the average distance that you are propelled forward per heart beat. The higher the number, the more efficient you are at running.

Published

I’m a long-term fan of Weezer. Such was the brilliance of their first two albums that I have stuck with them through thick and thin. And dear me, there has been some very thin music. Nonetheless I own every album – thirteen of them. Among them are six albums entitled “Weezer”. These records are colloquially referred to by the colour of the album. In chronological order: blue, green, red, white, teal and black.

Published

Over the holidays, I had an idea about looping an animation between two images. I wrote some code to do this in Igor Pro (sorry, no R this time…). This post describes how the code works and how you can make a similar animation. There was a reason to do this animation, but as a proof of principle I used two band logos.

Published

A while ago, I set up a couple of Raspberry Pi Zero cameras to make long-term time lapse movies. To recap: the idea was to take pictures every ten minutes and turn them into a movie. The process is totally automated so that every day, the photos from each Pi get saved to a server, and then processed into a movie that gradually gets longer and longer. At the end of the week, if the back up went OK, the photos get deleted from the Pi’s SD card.

Published

Time for an update to a previous post. For the past few years, I have been using an automated process to track citations to my lab’s work on Google Scholar (details of how to set this up are at the end of this post). Due to the nature of how Google Scholar tracks citations, it means that citations get added (hooray!) but might be removed (booo!). Using a daily scrape of the data it is possible to watch this happening.

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I was recently reminded of the wonders of paulstretch by a 8-fold slowed down version of Pyramid Song by Radiohead. Paulstretch is an audio manipulation widget that can stretch or compress the time of an audio recording. Note that it doesn’t “slow down” or “speed up” a recording, it resamples the audio and recasts it over a different time scale while maintaining the pitch.

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Our lab is international. People born all over the world have come to work in my group. I’m proud of this fact, especially in the current political climate. I’ve previously used the GoogleMaps API to display a heat map on our lab webpage. It shows where in the world people in the lab come from. This was OK, but I wanted to get an R based solution to make this graphic to make it easier to automate updates.

Published

This week Erick Martins Ratamero and I put up a preprint on vesicle packing. This post is a bit of backstory but please take a look at the paper, it’s very short and simple. The paper started when I wanted to know how many receptors could fit in a clathrin-coated vesicle. Sounds like a simple problem – but it’s actually more complicated.