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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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Published

You can find members of the rOpenSci team at various meetings and workshops around the world. Come say ‘hi’, learn about how our software packages can enable your research, or about our process for open peer software review and onboarding, how you can get connected with the community or tell us how we can help you do open and reproducible research. Where’s rOpenSci?

Published
Author Greg Finak

Sharing data sets for collaboration or publication has always been challenging, but it’s become increasingly problematic as complex and high dimensional data sets have become ubiquitous in the life sciences. Studies are large and time consuming; data collection takes time, data analysis is a moving target, as is the software used to carry it out.

Published

A while ago weonboarded anexciting package, codemetarby Carl Boettiger. codemetar is an R specificinformation collector and parser for the CodeMetaproject. In particular, codemetar candigest metadata about an R package in order to fill the termsrecognized by CodeMeta. This meansextracting information from DESCRIPTION but also from e.g. continuousintegration 1 badges in the README!

Published

You might have read my blog post analyzing the social weather ofrOpenScionboarding,based on a text analysis of GitHub issues. I extracted text out ofMarkdown-formatted threads with regular expressions. I basicallyhammered away at the issues using tools I was familiar with until itworked! Now I know there’s a much better and cleaner way, that I’llpresent in this note. Read on if you want to extract insights abouttext, code, links, etc.

Published
Author Scott Chamberlain

rgbif was seven years old yesterday! What is rgbif? rgbif gives you access to data from the Global Biodiversity Information Facility (GBIF) via their API. A samping of use cases covered in rgbif: Search for datasets Get metrics on usage of datasets Get metadata about organizations providing data to GBIF Search taxonomic names Get quick taxonomic name suggestions Search occurrences by taxonomic name/country/collector/etc.

Published
Authors Maëlle Salmon, Mark Padgham

This post is the 1st post of a series showcasing various rOpenScipackages as if Maëlle were a birder trying to make the most of R ingeneral and rOpenSci in particular. Although the series use cases willmostly feature birds , it’ll be the occasion to highlight rOpenSci’spackages that are more widely applicable, so read on no matter what yourfield is! Moreoever, each post should stand on its own.