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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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Published
Author Pachá (aka Mauricio Vargas Sepúlveda)

Summary censo2017 is an R package designed toorganize the Redatam 1 filesprovided by the Chilean National Bureau of Statistics (Instituto Nacional deEstadísticas de Chile in spanish) in DVD format 2 . This package was inspiredby citesdb(Noam Ross, 2020) and taxadb(Carl Boettiger et al, 2021).This post is about thispackage, the problem it solves, how to use it, and the fact that the package andits review process were all

Published
Author Matthew Strimas-Mackey

One of the first things I took on when I started at the Cornell Lab of Ornithology was creating the auk R package for accessing eBird data. The entire eBird dataset can be downloaded as a massive text file, called the eBird Basic Dataset (EBD), and auk pulls out manageable chunks of the dataset based on various spatial, temporal, or taxonomic filters.

Published
Author Scott Chamberlain

parzer is a new package for handling messy geographic coordinates.The first version is now on CRAN, with binaries coming soon hopefully (seenote about installation below). The package recently completed rOpenScireview. parzer motivation The idea for this package started with a tweet from Noam Ross(https://twitter.com/noamross/status/1070733367522590721) about 15 months ago.

Published
Author Malcolm Morgan

With services like Google Maps, finding the fastest route from A to B has become quick, cheap, and easy. Not just for driving but walking, cycling and public transport too. But in the field of transport studies, we often want not only a single route, but thousands or millions of routes.

Published
Authors Layik Hama, Robin Lovelace

Introduction stats19 is a new R package enabling access to and working withGreat Britain’s official road traffic casualty database,STATS19. We started the package in late 2018 following three main motivations: The release of the 2017 road crash statistics, which showedworsening road safety in some areas, increasing the importance ofmaking the data more accessible.

Published
Authors Alec Robitaille, Quinn Webber, Eric Vander Wal

spatsoc is an R package written by Alec Robitaille, Quinn Webber and Eric Vander Wal of the Wildlife Evolutionary Ecology Lab (WEEL) at Memorial University of Newfoundland. It is the lab’s first R package and was recently accepted through the rOpenSci onboarding process with a big thanks to reviewers Priscilla Minotti and Filipe Teixeira, and editor Lincoln Mullen.

Published
Author Kyle Bocinsky

The package FedData has gone through software review and is now part of rOpenSci. FedData includes functions to automate downloading geospatial data available from several federated data sources (mainly sources maintained by the US Federal government). Currently, the package enables extraction from six datasets: The National Elevation Dataset (NED) digital elevation models (1 and 1/3 arc-second;

Published
Authors Scott Chamberlain, Noam Ross

randgeo generates random points and shapes in GeoJSON and WKT formats foruse in examples, teaching, or statistical applications. Points and shapes are generated in the long/lat coordinate system and withappropriate spherical geometry; random points are distributed evenly acrossthe globe, and random shapes are sized according to a maximum great-circledistance from the center of the shape.

Published
Author Scott Chamberlain

I’ve recently released the new package ccafs, which provides accessto data from Climate Change, Agriculture and Food Security(CCAFS; http://ccafs-climate.org/) General Circulation Models (GCM) data.GCM’s are a particular type of climate model, used for weather forecasting,and climate change forecasting - read more athttps://en.wikipedia.org/wiki/General_circulation_model.