Did you know that GitHub lets you refer to the default branch of any repository by substituting the branch name with HEAD in the url? This is a very useful trick to write robust code that works regardless of whether the default branch is called main or master, and will keep working when the default branch gets renamed at some point.
Dear rOpenSci friends, it’s time for our monthly news roundup! You can read this post on our blog.Now let’s dive into the activity at and around rOpenSci!
rOpenSci Software Peer Review and Statistical Software Peer Review rely on the volunteer work of reviewers, and editors.Editors manage the day-to-day flow of submissions, recruit reviewers and guide the peer-review process from start to finish.
🔗TL;DR rsnps is a package that enables the retrieval of single nucleotide polymorphism (SNP) data from the NCBI’s dbSNP database and openSNP by providing wrappers for the APIs. Single nucleotide polymorphisms represent differences at one specific position in a detected biological sequence compared to the reference. ncbi_snp_query() now returns all reported variant allele frequencies in dbSNP in column maf_population in form of a tibble.
🔗R-universe now has search! We made a series of structural improvements in r-universe to make it easier to browse and discover interesting R packages and articles. Most notably, the r-universe.dev landing page has been overhauled: you can now search directly for any name or keyword across the entire ecosystem: The homepage also lists the popular topics and organizations, and links to recently active packages, articles, and maintainers.
At rOpenSci, much of our code, content and infrastructure is hosted on GitHub over several organizations – described on our resources page.This post summarizes some steps we’ve taken to safeguard our GitHub organizations. 🔗Paying attention to access rights &
Dear rOpenSci friends, it’s time for our monthly news roundup! You can read this post on our blog.Now let’s dive into the activity at and around rOpenSci! 🔗rOpenSci HQ 🔗R-universe gets advanced search! The landing page for rOpenSci’s R-universe platform has gotten a makeover to facilitate easy searching through thousands of available R packages and articles.
Dear rOpenSci friends, it’s time for our monthly news roundup! You can read this post on our blog.Now let’s dive into the activity at and around rOpenSci! 🔗rOpenSci HQ 🔗rOpenSci is hiring its next Community Manager! Come be part of making our great community even better; Help start a new program promoting diverse leadership in open source; Join a remote, flexible, global, friendly community and team!
This was how being a newcomer to rOpenSci OzUnconf 2019 felt. It was incredible to be a part of such a diverse, welcoming and inclusive environment. I thought it would be fun to blog about how it all began, and the twists and turns we experienced along the way as we developed the gghdr package. The package provides tools for plotting highest density regions with ggplot2 and was inspired by the package hdrcde developed by Rob J Hyndman.
🔗What is pkgcheck? The pkgcheck package hasbeen developed by rOpenSci to automate the process of checking all packages onsubmission.
The rOpenSci R-universe is a bit special as, compared to other R-universes, it builds docs for all the packages in our suite.Looking at the dashboard helps us identify failures in building the packages as well as in building the pkgdown websites.We then help authors fix these issues in order to comply with our package curation policy.As a package author you should also rely on continuous integration in your own repo for catching e.g. R CMD check
