One of the first things I took on when I started at the Cornell Lab of Ornithology was creating the auk R package for accessing eBird data. The entire eBird dataset can be downloaded as a massive text file, called the eBird Basic Dataset (EBD), and auk pulls out manageable chunks of the dataset based on various spatial, temporal, or taxonomic filters.
rOpenSci Software Peer Review’s guidance has been compiled in an online book for more than one year now. We’ve just released its fourth version.To find out what’s new in our dev guide 0.4.0, you can read the changelog,or this blog post for more digested information. Policy and governance changes Some aspects of the software review process changed.
After soliciting, reviewing, and publishing over 100 blog posts and tech notes by rOpenSci community members, we have created the rOpenSci Blog Guide for Authors and Editors to address many frequently asked questions and frequently given suggestions. Technically, we structured the content as a bookdown gitbook.
parzer is a new package for handling messy geographic coordinates.The first version is now on CRAN, with binaries coming soon hopefully (seenote about installation below). The package recently completed rOpenScireview. parzer motivation The idea for this package started with a tweet from Noam Ross(https://twitter.com/noamross/status/1070733367522590721) about 15 months ago.
“Continuous Integration” (CI) has become a standard for proper software development.Checking the integrity of software after changes have been made is essential to ensure its proper functionality.Also, CI helps catch problems introduced by dependencies early when executed on a regular basis (usually done via scheduled CRON runs). Multiple professional providers exist (Travis CI, AppVeyor CI, Circle CI, etc.) which offer CI services to the
For this Community Call, we’re trying something different. We’ll start with a short talk by Julia Silge , then spend most of the time on Q & A with four panelists - Elin Waring , Erin Grand , Leonardo Collado-Torres , and Scott Chamberlain - moderated by Julia. Our panelists bring a wide range of perspectives so there’s something for everyone.
With services like Google Maps, finding the fastest route from A to B has become quick, cheap, and easy. Not just for driving but walking, cycling and public transport too. But in the field of transport studies, we often want not only a single route, but thousands or millions of routes.
At their closing keynote at the 2020 RStudio Conference, Hilary Parker and Roger Peng mentioned that they hatched the idea for their excellent Not So Standard Deviations podcast following their reunion at the 2015 rOpenSci unconf, (“runconf15”). That statement went straight to my heart because it pin-pointed how I had been feeling throughout the week of RStudio Conference that I had been unable to name.
rOpenSci HQ On behalf of rOpenSci, thank you to everyone who has contributed their creativity, curiosity, smarts, and time in the last year. Read our Thank You, 2019. Software Peer Review 3 community-contributed packages passed software peer review. osfr - R Interface to OSF. Author: Aaron Wolen; Reviewers: Heidi Seibold, Carl Boettiger;
Dealing with taxonomic inconsistencies within and across datasets is a fundamental challenge of ecology and evolutionary biology. Accounting for species synonyms, taxa splitting and unification is especially important as aggregation of data across time and different data sources becomes increasingly common.
