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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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You can find members of the rOpenSci team at various meetings and workshops around the world. Come say ‘hi’, learn about how our packages can enable your research, or about our onboarding process for contributing new packages, discuss software sustainability or tell us how we can help you do open and reproducible research. Where’s rOpenSci?

Published
Author Noam Ross

Since June, we have been highlighting the many projects that emerged from this year’s rOpenSci Unconf. These projects start many weeks before unconf participants gather in-person. Each year, we ask participants to propose and discuss project ideas ahead of time in a GitHub repo. This serves to get creative juices flowing as well as help people get to know each other a bit through discussion.

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Authors Eduardo Arino de la Rubia, Shannon E. Ellis, Julia Stewart Lowndes, Hope McLeod, Amelia McNamara, Michael Quinn, Elin Waring, Hao Zhu

Like every R user who uses summary statistics (so, everyone), our team has to rely on some combination of summary functions beyond summary() and str(). But we found them all lacking in some way because they can be generic, they don’t always provide easy-to-operate-on data structures, and they are not pipeable. What we wanted was a frictionless approach for quickly skimming useful and tidy summary statistics as part of a pipeline.

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Authors Becca Krouse, Erin Grand, Hannah Frick, Lori Shepherd, Sam Firke, William Ampeh

Before everybody made their way to the unconf via LAX and Lyft, attendees discussed potential project ideas online. The packagemetrics package was our answer to two related issues. The first proposal centered on creating and formatting tables in a reproducible workflow.

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Author Shannon E. Ellis

What’s that? You’ve heard of R? You use R? You develop in R? You know someone else who’s mentioned R? Oh, you’re breathing? Well, in that case, welcome! Come join the R community! We recently had a group discussion at rOpenSci’s #runconf17 in Los Angeles, CA about the R community. I initially opened the issue on GitHub.

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Authors Noam Ross, Alice Daish, Laura DeCicco, Molly Lewis, Nistara Randhawa, Jennifer Thompson, Nicholas Tierney

Two years ago at #runconf15, there was a great discussion about best practices for organizing R-based analysis projects that yielded a nice guidance document describing research compendia . Compendia, as we described them, were minimal products of reproducible research, using parts of R package structure to organize the inputs, analyses, and outputs of research projects.

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Author Karthik Ram

And finally, we end our series of unconf project summaries (day 1, day 2, day 3, day 4). mwparser Summary: Wikimarkup is the language used on Wikipedia and similar projects, and as such contains a lot of valuable data both for scientists studying collaborative systems and people studying things documented on or in Wikipedia.

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Author Scott Chamberlain

Continuing our series of blog posts (day 1, day 2, day 3) this week about unconf 17. cityquant Summary: The goal with the cityquant project was to build a digital dashboard for sustainable cities. They also had a “spin-off” project called selfquant to get data from a quantified self google sheets template to keep track of weekly performance in various categories.

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Author Karthik Ram

Continuing our series of blog posts (day 1, day 2) this week about unconf 17. available Summary: Ever have trouble naming your software package? Find a great name and realize it’s already taken on CRAN, or further along in development on GitHub? The available package makes it easy to check for valid, available names, and also checks various sources for any unintended meanings.

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Author Scott Chamberlain

Following up on Stefanie’s recap of unconf 17, we are following up this entire week with summaries of projects developed at the event. We plan to highlight 4-5 projects each day, with detailed posts from a handful of teams to follow. checkers Summary: checkers is a framework for reviewing analysis projects. It provides automated checks for best practices, using extensions on the goodpractice package.