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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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CommunityDataSoftware Peer ReviewPackagesData ExtractionComputer and Information Sciences
Published
Author Jorge Cimentada

Introduction I never thought that I’d be programming software in my career. I startedusing R a little over 2 years now and it’s been one of the most importantdecisions in my career. Secluded in a small academic office with no oneto discuss/interact about my new hobby, I started searching the web fortutorials and packages. After getting to know how amazing and nurturingthe R community is, it made me want to become a data scientist.

PackagesSshTech NotesComputer and Information Sciences
Published
Author Jeroen Ooms

Have you ever needed to connect to a remote server over SSH to transfer files via SCP or to setup a secure tunnel, and wished you could do so from R itself? The new rOpenSci ssh package provides a native ssh client in R allows you to do that and even more, like running a command or script on the host while streaming stdout and stderr directly to the client. The package is based on libssh, a powerful C library implementing the SSH protocol.

CommunityMeetingsUnconfUnconf18Computer and Information Sciences
Published
Author Scott Chamberlain

For the fourth and last day of project recaps from this year’s unconf, here is an overview of the next five projects. (Full set of project recaps: recap 1, recap 2, recap 3, recap 4.) In the spirit of exploration and experimentation at rOpenSci unconferences, these projects are not necessarily finished products or in scope for rOpenSci packages.

CommunityInterviewsRprofileComputer and Information Sciences
Published
Author Kelly O'Briant

KO: What is your name, job title, and how long have you been using R? JS: My name is Julia Silge and I’m a data scientist at Stack Overflow. I have been working in R for less than three years. KO: Wow! What were you all about before that?

CommunityMeetingsUnconfUnconf18Computer and Information Sciences
Published
Author Maëlle Salmon

For day 3 of project recaps from this year’s unconf, here is an overview of the next five projects. Stay tuned for the last recap tomorrow. (Full set of project recaps: recap 1, recap 2, recap 3, recap 4.) In the spirit of exploration and experimentation at rOpenSci unconferences, these projects are not necessarily finished products or in scope for rOpenSci packages.

CommunityMeetingsUnconfUnconf18Computer and Information Sciences
Published
Author Stefanie Butland

We held our 5th annual unconference in Seattle, May 21-22, 2018 at Microsoft’s Reactor space. Researchers, students, postdocs and faculty, R software users and developers, and open data enthusiasts from academia, industry, government, and non-profits came together for two days to hack on projects they dreamed up and for an opportunity to meet and work together in person.

CommunityMeetingsUnconfUnconf18Computer and Information Sciences
Published
Author Maëlle Salmon

After Stefanie’s recap of unconf18, this week the blog will feature brief summaries of projects developed at the event: each day 4 to 5 projects will be highlighted. (Full set of project recaps: recap 1, recap 2, recap 3, recap 4) In the following weeks, a handful of groups will share more thorough posts about their work.

RubyVcrHttpMockingRequestComputer and Information Sciences
Published
Author Scott Chamberlain

R package test suites that include HTTP requests are dependent on an internet connection being up, the internet connection speed, changing behavior of the remote server, as well as changing response formats/data from a remote server. We ideally want to test functionality of our package relative to some known data that isn’t intermittently unavailable or changing.

TaxonomyTaxizeTaxizedbTaxaTech NotesComputer and Information Sciences
Published
Author Scott Chamberlain

taxize was seven years old this last Saturday!What is taxize? taxize is designed around making working with taxonomic names easier - abstracting away the details of what each of 20 or so taxonomic data sources require for a given use case.

SoftwarePackagesDrakeReproducibilityHigh Performance ComputingComputer and Information Sciences
Published
Author Will Landau

The drake R package is not only a reproducible research solution, but also a serious high-performance computing engine. The package website introduces drake, and this technical note draws from the guides on high-performance computing and timing in the drake manual.You can help! Some of these features are brand new, and others are newly refactored.