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rOpenSci - open tools for open science

rOpenSci - open tools for open science
Open Tools and R Packages for Open Science
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Authors Eduardo Arino de la Rubia, Shannon E. Ellis, Julia Stewart Lowndes, Hope McLeod, Amelia McNamara, Michael Quinn, Elin Waring, Hao Zhu

Like every R user who uses summary statistics (so, everyone), our team has to rely on some combination of summary functions beyond summary() and str(). But we found them all lacking in some way because they can be generic, they don’t always provide easy-to-operate-on data structures, and they are not pipeable. What we wanted was a frictionless approach for quickly skimming useful and tidy summary statistics as part of a pipeline.

Published
Author Karthik Ram

rOpenSci’s mission is to promote a culture of open, transparent, and reproducible research across various research domains. Everything we do, from developing high-quality open-source software for data science and, software review, to building community through events like our community calls and annual unconference are all geared toward lowering barriers to reproducible, open science.

Published
Authors Alicia Schep, Miles McBain

We, Alicia Schep and MilesMcBain, drove the webrockets projectat #runconf17.To make progress we solicited code, advice, and entertaining anecdotesfrom a host of other attendees, whom we humbly thank for helping to makeour project possible. This post is divided into two sections: First up we’ll relate ourexperiences, prompted by some questions we wrote forone another.

Published
Authors Stefanie Butland, Karthik Ram, Dan Sholler

We are pleased to welcome our Postdoctoral Fellow, Dr. Dan Sholler. Dan is an expert in qualitative research (yes, you read that correctly) and studies digital infrastructure creation, growth, and maintenance efforts. Through this research interest, he was drawn to the open science community and its ongoing development of tools and communities to support sustainable, reproducible, high-quality research.

Published
Authors Becca Krouse, Erin Grand, Hannah Frick, Lori Shepherd, Sam Firke, William Ampeh

Before everybody made their way to the unconf via LAX and Lyft, attendees discussed potential project ideas online. The packagemetrics package was our answer to two related issues. The first proposal centered on creating and formatting tables in a reproducible workflow.

Published
Author Shannon E. Ellis

What’s that? You’ve heard of R? You use R? You develop in R? You know someone else who’s mentioned R? Oh, you’re breathing? Well, in that case, welcome! Come join the R community! We recently had a group discussion at rOpenSci’s #runconf17 in Los Angeles, CA about the R community. I initially opened the issue on GitHub.

Published
Author Scott Chamberlain

Excited to annonunce a new package called charlatan. While perusingpackages from other programming languages, I saw a neat Python librarycalled faker. charlatan is inspired from and ports many things from Python’shttps://github.com/joke2k/faker library. In turn, faker was inspired fromPHP’s faker,Perl’s Faker, andRuby’s faker. It appears that the PHPlibrary was the original - nice work PHP. Use cases What could you do with this package?

Published
Authors Noam Ross, Alice Daish, Laura DeCicco, Molly Lewis, Nistara Randhawa, Jennifer Thompson, Nicholas Tierney

Two years ago at #runconf15, there was a great discussion about best practices for organizing R-based analysis projects that yielded a nice guidance document describing research compendia . Compendia, as we described them, were minimal products of reproducible research, using parts of R package structure to organize the inputs, analyses, and outputs of research projects.

Published
Author Karthik Ram

And finally, we end our series of unconf project summaries (day 1, day 2, day 3, day 4). mwparser Summary: Wikimarkup is the language used on Wikipedia and similar projects, and as such contains a lot of valuable data both for scientists studying collaborative systems and people studying things documented on or in Wikipedia.