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Henry Rzepa's Blog
Chemistry with a twist
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Interesting ChemistryAnimationAsymmetric EpoxidationCatalysisEnantioselectiveChemical Sciences
Published

Sharpless epoxidation converts a prochiral allylic alcohol into the corresponding chiral epoxide with > 90% enantiomeric excess[cite]10.1021/jo00369a032[/cite],[cite]10.1021/jo00360a058[/cite]. Here is the first step in trying to explain how this magic is achieved.

AntiaromaticityEnergyJahn-Teller DistortionReaction MechanismTutorial MaterialChemical Sciences
Published

I noted briefly in discussing why Birch reduction of benzene gives 1,4-cyclohexadiene (diagram below) that the geometry of the end-stage pentadienyl anion was distorted in the presence of the sodium cation to favour this product. This distortion actually has some pedagogic value, and so I elaborate this here.

Birch ReductionDielectricEnergyFree EnergyFree Energy BarrierChemical Sciences
Published

I promised that the follow-up to on the topic of Birch reduction would focus on the proton transfer reaction between the radical anion of anisole and a proton source, as part of analysing whether the mechanistic pathway proceeds O or M . To add some context, Hammond’s postulate [cite]10.1021/ja01607a027[/cite] states that “ the structure of a transition state resembles that of the species nearest

DielectricEnergyFree EnergyReaction MechanismTutorial MaterialChemical Sciences
Published

The Birch reduction is a classic method for partially reducing e.g. aryl ethers using electrons (from sodium dissolved in ammonia) as the reductant rather than e.g. dihydrogen. As happens occasionally in chemistry, a long debate broke out over the two alternative mechanisms labelled O (for ortho protonation of the initial radical anion intermediate) or M (for meta protonation).

MöbiusPericyclicPericylicPositive Energy Activation BarrierReaction MechanismChemical Sciences
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A dichotomy is a division into two mutually exclusive, opposed, or contradictory groups. Consider the reaction below*.* The bicyclic pentadiene on the left could in principle open on heating to give the monocyclic [12]-annulene (blue or red) via what is called an electrocyclic reaction as either a six (red) or eight (blue) electron process. These two possibilities represent our dichotomy;

Interesting ChemistryFree EnergyMöbius KnotMöbius LinkPericyclicChemical Sciences
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I was intrigued by one aspect of the calculated transition state for di-imide reduction of an alkene; the calculated NMR shieldings indicated an diatropic ring current at the centre of the ring, but very deshielded shifts for the hydrogen atoms being transferred. This indicated, like most thermal pericyclic reactions, an aromatic transition state. Well, one game one can play with this sort of reaction is to add a double bond.

Free Energy DiscriminationPericyclicReaction MechanismTutorial MaterialChemical Sciences
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Not a few posts on this blog dissect the mechanisms of well known text-book reactions. But one reaction type where there are few examples on these pages are reductions. These come in three types; using electrons, using a hydride anion and using di-hydrogen. Here I first take a closer look at the third type, and in particular di-hydrogen as delivered from di-imide.

Interesting ChemistryMetal WireChemical Sciences
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More than 60 million molecules are known, and many are fascinating. But beauty is in the eye of the beholder. Thus it was that I came across the attached molecule[cite]10.1021/ja982065w[/cite]. It struck me immediately as, well, beautiful! GOCTOH. Click for 3D. This is one that comes to life in 3D and I strongly urge you to inspect it as such by clicking on the above. Why is it so interesting?

Interesting Chemistry298 4.7Aqueous MediaATMEnergy BarrierChemical Sciences
Published

Thalidomide is a chiral molecule, which was sold in the 1960s as a sedative in its (S,R)-racemic form. The tragedy was that the (S)-isomer was tetragenic, and only the (R) enantiomer acts as a sedative. What was not appreciated at the time is that interconversion of the (S)- and (R) forms takes place quite quickly in aqueous media.