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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Interesting ChemistryFree Ligand SiteMetalMetal CoordinationReaction MechanismChemical Sciences
Published

Alkene metathesis is part of a new generation of synthetic reaction in which a double C=C bond is formed from appropriate reactants where no bond initially exists (another example is the Wittig reaction), with the involvement of a 4-membered-ring metallacyclobutane ring 1 (again, very similar to the Wittig). I thought it might make a good addition to my collection of reaction mechanisms and so as the first step

Reaction MechanismTutorial MaterialChemical Sciences
Published

This is the follow-up to the previous post exploring a typical nucleophilic addition-elimination reaction. Here is the elimination step, which as before requires proton transfers. We again adopt a cyclic mechanism to try to avoid the build up of charge separation during those proton movements. Elimination step to form an oxime. Click for animation of reaction mode.

Interesting ChemistryReaction MechanismAnimationEnergy DifferenceFree EnergyChemical Sciences
Published

The mechanism of forming an oxime from nucleophilic addition of a hydroxylamine to a ketone is taught early on in most courses of organic chemistry. Here I subject the first step of this reaction to form a tetrahedral intermediate to quantum mechanical scrutiny. The first decision is to decide which atom of the hydroxylamine acts as the nucleophile. Reaction 1 shows the oxygen and reaction 2 the nitrogen.

Interesting ChemistryAromatic SystemsClarPericyclicReaction MechanismChemical Sciences
Published

Semibullvalene is a molecule which undergoes a facile [3,3] sigmatropic shift. So facile that it appears this equilibrium can be frozen out at the transition state if suitable substituents are used. This is a six-electron process, which leads to one of those homologous questions; what happens with ten electrons? A 5,5 double Möbius sigmatropic rearrangement. Click for 3D model.

Interesting ChemistryPericyclicChemical Sciences
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I am following up on one unfinished thread in my previous post; a candidate was proposed in which the transition state for [3,3] sigmatropic rearrangement in a semibullvalene might be frozen out to become instead a stable minimum. The hypothesis was that such a species would be aromatic, a bis -homoaromatic species to be precise, itself an interesting variation on the normal theme of aromaticity.

Interesting ChemistryCandidate For Synthesis PerhapsEnergyPericyclicPostscriptChemical Sciences
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Semibullvalene is an unsettling molecule. Whilst it has a classical structure describable by a combination of Lewis-style two electron and four electron bonds, its NMR behaviour reveals it to be highly fluxional. This means that even at low temperatures, the position of these two-electron bonds rapidly shifts in the equilibrium shown below. Nevertheless, this dynamic behaviour can be frozen out at sufficiently low temperatures.

Interesting ChemistryCambridgeSteve BachrachChemical Sciences
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Here is a challenge: what is the longest C-C bond actually determined (in which both carbon termini are sp 3 hybridised)? I pose this question since Steve Bachrach has posted on how to stabilize long bonds by attractive dispersive interactions, and more recently commenting on what the longest straight chain alkane might be before dispersive interaction start to fold it (the answer appears to be C 17 ). A search of the

Potential Energy SurfacesReaction MechanismTutorial MaterialChemical Sciences
Published

An obvious issue to follow-up my last post on the (solvated) intrinisic reaction coordinate for the Sn2 reaction is how variation of the halogen (X) impacts upon the nature of the potential.