Chemical SciencesWordPress

Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
Home PageAtom Feed
language
GeneralInteresting ChemistryCCPChemical PictureChemistChemical Sciences
Published

The properties of electrons are studied by both chemists and physicists. At the boundaries of these two disciplines, sometimes interesting differences in interpretation emerge. One of the most controversial is that due to Bader (for a recent review, see DOI: 10.1021/jp102748b) a physicist who brought the mathematical rigor of electronic topology to bear upon molecules.

Interesting ChemistryBonded SystemsEnergy Difference DropsFree EnergyModelChemical Sciences
Published

To (mis)quote Oscar Wilde again, ““To lose one methyl group may be regarded as a misfortune; to lose both looks like carelessness.” Here, I refer to the (past) tendency of molecular modellers to simplify molecular structures. Thus in 1977, quantum molecular modelling, even at the semi-empirical level, was beset by lost groups.

GeneralInteresting ChemistryChemical Sciences
Published

A Matryoshka doll is better known as a Russian nesting doll. They can have up to eight layers. Molecules can only emulate two layers, although see here for a good candidate for making a three-layered example (the inside layer is C60, which itself might encapsulate a small molecule.

Interesting ChemistryCyclobutadieneFollowing Model For This PostFree EnergyGlycineChemical Sciences
Published

Organic chemistry has some no-go areas, where few molecules dare venture. One of them is described by a concept known as anti-aromaticity. Whereas aromatic molecules are favoured species, their anti-equivalent is avoided. I previously illustrated this (Hückel rule) with cyclopropenium anion.

Interesting ChemistryAutomated Stochastic Search ProcedureFree EnergyMetalScientistChemical Sciences
Published

The (hopefully tongue-in-cheek) title Mindless chemistry was given to an article reporting an automated stochastic search procedure for locating all possible minima with a given composition using high-level quantum mechanical calculations. “Many new structures, often with nonintuitive geometries, were found”. Well, another approach is to follow unexpected hunches.

Interesting Chemistry3-dimethylcyclobutadieneBlog ServerCalixareneChemical ThinkingChemical Sciences
Published

I have mentioned Lewis a number of times in these posts; his suggestion of the shared electron covalent bond still underpins much chemical thinking. Take for example mechanistic speculations on the course of a reaction, a very common indulgence in almost all articles reporting such, and largely based on informed  arrow pushing.

Interesting ChemistryBasic BoronTutorial MaterialChemical Sciences
Published

I have often heard the question posed “how much of chemistry has been discovered?” Another might be “has most of chemistry, like low-hanging fruit, already been picked?“. Well, time and time again, one comes across examples which are only a simple diagram or so away from what might be found in any introductory chemistry text, […]