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Henry Rzepa's Blog

Henry Rzepa's Blog
Chemistry with a twist
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Interesting ChemistryEnergyEnergy ProfileHeadLow Energy BarrierChemieEnglisch
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Paul Schleyer sent me an email about a pattern he had spotted, between my post on F 3 SSF and some work he and Michael Mauksch had done 13 years ago with the intriguing title “ Demonstration of Chiral Enantiomerization in a Four-Atom Molecule ”.[cite]http://doi.org/d8g2nw[/cite] Let me explain the connection, but also to follow-up further on what I discovered in that post and how a new connection evolved.

Chemical ITInteresting ChemistryChemical TaggerData MiningDatumentChemieEnglisch
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I do go on rather a lot about enabling or hyper-activating[cite]10.1039/P29950000007[/cite] data. So do others[cite]10.1038/nj7461-243a[/cite]. Why is sharing data important? Reproducibility is a cornerstone in science, To achieve this, it is important that scientific research be open and transparent. Openly available research data is central to achieving this.

Interesting ChemistryReaction MechanismAndy ExtanceMinimum Energy PathwayChemieEnglisch
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Andy Extance at the Chemistry World blog has picked up on a fascinating article[cite]10.1021/jz401578h[/cite] on the dimer of SF 2 . This molecule has three F atoms on one S, and only one on the other; FSSF 3 . But all four S-F bonds are of different length.

Curly ArrowsReaction MechanismActivation Free EnergyArrow PushingCurly ArrowChemieEnglisch
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The concept of a “ hidden intermediate ” in a reaction pathway has been promoted by Dieter Cremer[cite]10.1021/ar900013p[/cite] and much invoked on this blog. When I used this term in a recent article of ours[cite]10.1021/jo401146k[/cite], a referee tried to object, saying it was not in common use in chemistry. The term clearly has an image problem.

Interesting Chemistry3D Colour Printing3D PrintingBob HansonChemical ModelsChemieEnglisch
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We have been experimenting with full-colour 3D printing of molecular objects. I thought I might here share some of our observations. Firstly, I list the software used: Crystal structures as sources of ball&stick models ( e.g. the CCDC database). Gaussian style cube files for sources of wavefunctions.

Interesting ChemistryAbove Energy DiagramEnergyEnergy TransferEnergy Transfer OccurringChemieEnglisch
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The ultimate reduction in size for an engineer is to a single molecule. It’s been done for a car; now it has been reported for the pixel (picture-element).[cite]10.1021/ja404256s[/cite] The molecule above (X=O, NR, R=aryl, etc) has been shown to be capable of acting as a molecular pixel.

Interesting ChemistryChemieEnglisch
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This potential example of a molecule on the edge of chaos was suggested to me by a student (thanks Stephen!), originating from an inorganic tutorial. It represents a class of Mo-complex ligated by two dithiocarbamate ligands and two aryl nitrene ligands (Ar-N:). I focus on two specific examples[cite]10.1039/A907382E[/cite], where R=R’ = H or Me, with crystal structures available for both.

Interesting ChemistryCambridgeChemical ReasonsMetalMetal SulfidesChemieEnglisch
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I noted previously that some 8-ring cyclic compounds could exist in either a planar-aromatic or a non-planar-non-aromatic mode, the mode being determined by apparently quite small changes in a ring substituent. Hunting for other examples of such chemistry on the edge, I did a search of the Cambridge crystal database for metal sulfides.