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iPhylo

Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed.ISSN 2051-8188. Written content on this site is licensed under a Creative Commons Attribution 4.0 International license.
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Having made a first stab at mapping NCBI taxa to Wikipedia, I thought it might be fun to see what could be done with it. I've always wanted to get quantum treemaps working (quantum treemaps ensure that the cells in the treemap are all the same size, see my 2006[!] blog post for further description and links). After some fussing I have some code that seems to do the trick. As an example, here is a quantum treemap for Laurasiatheria.

Published

One of the things I've struggled with most in putting together a web site for the challenge is how to summarise that taxonomic content of a study. Initially I was playing with showing a subtree of the NCBI taxonomy, highlighting the taxa in the study. But this assumes the user is familiar with the scientific names of most of life. I really wanted something that tells you "at a glance" what the study is about.